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Priority Rules for Chiral Centers: The R,S System, Study notes of Chemistry

The priority rules for determining the chiral configuration (r or s) of a molecule at a chiral center. The rules prioritize atoms or groups of atoms based on atomic number, number of substituents, and double bonds. Atoms participating in double bonds are considered bonded to phantom atoms. The final configuration is determined by the order of the three highest priority groups projecting from the chiral center.

What you will learn

  • What are the priority rules for determining the chiral configuration (R or S) of a molecule?
  • What role do double bonds play in determining the chiral configuration?
  • How does the document prioritize atoms or groups of atoms at a chiral center?

Typology: Study notes

2021/2022

Uploaded on 09/12/2022

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Priority Rules for Naming Chiral Centers - The R,S System
1. Prioritize the four atoms, or groups of atoms, attached to the chiral center based on the
atomic number of the atom that is bonded directly to the chiral center. The higher the atomic
number, the higher the priority.
!Number the four atoms, or groups of atoms, such that “1” has the highest priority and
“4” has the lowest priority.
2. If two or more of the atoms that are bonded directly to the chiral center are the same, then
prioritize these groups based on the next set of atoms (i.e., atoms adjacent to the directly-
bonded atoms). Continue until priorities can be assigned. Priority is assigned at the first
point of difference.
!If two atoms have substituents of the same priority, higher priority is assigned to the
atom with more of these substituents.
!A larger group (i.e., more atoms) may not necessarily have a higher priority over
another (smaller) group.
-CH2Cl has higher priority than -CH2CH2CH2CH3
H
C
Cl
CH3
Br
atomic numbers
H
C
Cl
Br
1
6
17
35
H(4)
C
Cl(2)
CH3(3)
Br(1)
chiral center
prioritize
H
C
Cl
CH3
CH2CH3
atomic numbers
H
C
Cl
1
6
17
H(4)
C
Cl(1)
CH3(3)
CH2CH3(2)
chiral center
prioritize
C
H
Cl Cl C
H
HCl
(-CHCl2)(-CH2Cl)
has higher priorit y than
pf2

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Priority Rules for Naming Chiral Centers - The R,S System

1. Prioritize the four atoms, or groups of atoms, attached to the chiral center based on the

atomic number of the atom that is bonded directly to the chiral center. The higher the atomic

number, the higher the priority.

! Number the four atoms, or groups of atoms, such that “1” has the highest priority and

“4” has the lowest priority.

2. If two or more of the atoms that are bonded directly to the chiral center are the same, then

prioritize these groups based on the next set of atoms (i.e., atoms adjacent to the directly-

bonded atoms). Continue until priorities can be assigned. Priority is assigned at the first

point of difference.

! If two atoms have substituents of the same priority, higher priority is assigned to the

atom with more of these substituents.

! A larger group (i.e., more atoms) may not necessarily have a higher priority over

another (smaller) group.

-CH 2 Cl has higher priority than -CH 2 CH 2 CH 2 CH 3

H

C

Cl

CH 3

Br

atomic numbers

H C Cl Br

H(4)

C

Cl (^) (2)

CH3(3)

Br (^) (1)

chiral center

prioritize

H

C

Cl

CH 3

CH 2 CH 3

atomic numbers

H C Cl

H(4)

C

Cl(1)

CH3(3)

CH 2 CH3(2)

chiral center

prioritize

C

H

Cl

Cl C

H

H

Cl

(-CHCl 2 ) (-CH 2 Cl)

has higher priority than

2

  1. Atoms participating in double/triple bonds are considered to be bonded to an equivalent

number of similar “phantom” atoms by single bonds. Note: “phantom” atoms are bonded to no other atoms.

  1. Orient the molecule in space so that the lowest priority group (#4) is directed away from you.

The three remaining groups then project toward you.

  1. If the three groups projecting toward you are ordered from highest priority (#1) to lowest

priority (#3) clockwise , then the configuration is “ R ”. If the three groups projecting toward you are ordered from highest priority (#1) to lowest priority (#3) counterclockwise , then the configuration is “ S ”.

CH CH 2 C

C

H

C

C

H

H C CH C

C

C

C

C

C

H

C N C

N

N

N

C

C

C

O

H C

O C

O

H

H

C

Cl

CH 3

Br

H(4)

C

Cl(2)

CH3(3)

Br(1)

prioritize

Br(1)

C

Cl(2)

H(4)

CH3(3)

reorient

H (^) (4)

C Cl (^) (2)

CH (^) 3(3)

Br (^) (1)

Br (^) (1)

C Cl (^) (2)

H(4)

CH (^) 3(3)

H (^) (4)

C Cl (^) (1)

CH (^) 3(3)

CH 2 CH3(2)

CH 2 CH (^) 3(2)

C Cl (^) (1)

H(4)

CH (^) 3(3)

counterclockwise

clockwise

S configuration

R configuration