Docsity
Docsity

Prepare for your exams
Prepare for your exams

Study with the several resources on Docsity


Earn points to download
Earn points to download

Earn points by helping other students or get them with a premium plan


Guidelines and tips
Guidelines and tips

Primer Design for DNA Cloning, Cheat Sheet of Biometrics

A detailed guide on primer design for dna cloning experiments. It covers the key steps involved in designing forward and reverse primers for genes cloned into pbdc and pobd plasmids, including information on primer length, melting temperature, and gc content. The document also includes a dna sequence and instructions for designing primers based on the provided sequence. Additionally, it explains the purpose of primer design and the definition of a primer in the context of dna synthesis. This comprehensive resource would be valuable for students and researchers working on dna cloning and molecular biology experiments.

Typology: Cheat Sheet

2022/2023

Uploaded on 12/01/2023

olivia-charpentier
olivia-charpentier 🇺🇸

6 documents

1 / 3

Toggle sidebar

This page cannot be seen from the preview

Don't miss anything!

bg1
ICA: Primer Design
(submit one per student)
Be sure to type your response in red text.
You should save your work as PDF and submit as such on via MOODLE turn it in.
You can source for information online.
1. Insert a screenshot of the circular pBDC plasmids with primers from today’s activity (PROTOCOL: Primer Design
step 19):
2. Write out the primer information for your gene cloned into the pBDC plasmid (PROTOOL: Primer Design step 17)
Forward primer (insert name and sequence): ATGGTCAACAAACAGTATTCG
Base pair: 21BP
Melting temperature (Tm): 53 C
GC %: 38%
Reverse primer (insert name and sequence): ACTGGGCAGTCGCTTGCTG
Base pair: 19 BP
Melting temperature (Tm):62 C
GC %:63 %
3. Insert a screenshot of the circular pOBD plasmid with primers annotated from today’s activity (PROTOCOL:
Primer Design step 37):
pf3

Partial preview of the text

Download Primer Design for DNA Cloning and more Cheat Sheet Biometrics in PDF only on Docsity!

ICA: Primer Design

(submit one per student) Be sure to type your response in red text. You should save your work as PDF and submit as such on via MOODLE turn it in. You can source for information online.

  1. Insert a screenshot of the circular pBDC plasmids with primers from today’s activity (PROTOCOL: Primer Design step 19):
  2. Write out the primer information for your gene cloned into the pBDC plasmid (PROTOOL: Primer Design step 17)  Forward primer (insert name and sequence): ATGGTCAACAAACAGTATTCG  Base pair: 21BP  Melting temperature (Tm): 53 C  GC %: 38%  Reverse primer (insert name and sequence): ACTGGGCAGTCGCTTGCTG  Base pair: 19 BP  Melting temperature (Tm):62 C  GC %:63 %
  3. Insert a screenshot of the circular pOBD plasmid with primers annotated from today’s activity (PROTOCOL: Primer Design step 37):
  1. Write out the primer information for your gene cloned into the pOBD plasmid (PROTOOL: Primer Design step 35)  Forward primer (insert name and sequence): ATGGTCAACAAACAGTATTCGG  Base pair:  Melting temperature (Tm):56 C  GC %:41 %  Reverse primer (insert name and sequence): CTAACTGGGCAGTCGCTTGC  Base pair:  Melting temperature (Tm):60 C  GC %: 60 %
  2. What is a primer?  A short nucleic acid sequence that provided a starting point for the DNA synthesis.
  3. What is the purpose of designing primers?  to determine a set of forward or reverse primers that will amplify one group of sequences.
  4. Given below is the DNA sequence of the top strand of a gene with a few additional nucleotides at the 5’- and 3’- ends. Use it to answer the questions that follow. 5’ - GATACCCCACCAAACCCAAAAAAAGAGATCGAATTCATGGTGCCCATCGGAGCCGTGCACGGCGGCCATCCCGGCGTAGTGCATCCG CCACAGCAACCACTGCCCACGGCGCCCAGCGGCCCAAACTCGCTGCAGCCGAACTCGGTGGGCCAGCCGGGGGCCACCACCTCCTC GAACAGCAGCGCCTCCAACAAGAGCTCGCTATCCGTCAAGCCCAACTACACGCTCAAGTTCACGCTGGCCGGGCACACCAAGGCGGT GTCGGCGGTCAAGTTCAGTCCGAATGGCGAGTGGCTGGCCAGCTCCTCCGCTGATAAACTAATCAAAATCTGGGGAGCATACGATG GCAAGTTCGAGAAGACCATTTCGGGCCACAAGCTGGGCATCAGCGATGTGGCCTGGAGCTCAGACTCGCGACTCCTCGTGAGCGGC AGTGATGACAAGACGCTCAAGGTCTGGGAGCTGAGCACCGGGAAGAGCTTGAAAACTCTGAAGGGCCACAGCAACTATGTGTTCTG CTGCAACTTTAATCCGCAGTCCAATCTGATCGTCTCCGGCAGCTTCGACGAGAGCGTTCGCATATGGGATGTGCGCACCGGCAAGTG TCTGAAGACTCTACCCGCCCATTCCGATCCCGTTTCGGCGGTACATTTCAATCGCGACGGATCGCTGATCGTGAGCAGCAGCTACGAC