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Amino Acid Ionization: pKa, Zwitterions, and Titration Curves, Study notes of Biochemistry

The ionization of amino acids and the environmental effects on their pka values. It covers the behavior of amino acids in acidic and basic conditions, the concept of zwitterions, and the influence of intramolecular interactions. The document also discusses titration curves, buffer regions, and the impact of ionizable r groups on the isoelectric point (pi) and buffering capacity of amino acids. It provides a detailed overview of how amino acids act as buffers and how their ionization states change with ph variations, including specific examples and pka values for various amino acids. This information is crucial for understanding protein structure, function, and behavior in biological systems, making it a valuable resource for students and researchers in biochemistry and related fields.

Typology: Study notes

2022/2023

Available from 05/23/2025

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Amino
Acid
:
Ionization
and
Environment
contain
at
least
two
Ionizable
protons
,
each
with
its
own
pKa
no
/
The
carboxylic
acid
has
an
acidic
pKa
and
will
be
protonated
at
an
acidic
(
low
)
pH
:
AAAA
-
gpq-g.gg
-
cootie
>
ooo
-
+
ti
/
The
amino
group
has
a
basic
pKa
and
will
be
protonated
until
basic
pH
(
high
)
is
achieved
:
ANAP
-
NH
;
NH
>
+
H
"
Environmental
Effects
A-
carboxy
group
is
much
more
acidic
than
in
carboxylic
acids
A-
amino
group
Is
slightly
less
basic
than
in
amines
Due
to
intramolecular
interactions
7-
The
normal
pKa
for
a
PKa
2
µ
(
carboxyl
group
is
about
4.8
8
10
12
Methyl
-
substituted
amino
group
is
about
10
:b
"
"
"
"
"
"
"
"
°
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
"
groups
CH
,
-
COOH
CH
,
-
COO
-
'
II
*
e-
my
mine
¥3
+
Acetic
acid
H+
1MHz
carboxyl
and
H
-
c-
"
°
"
"
¥3
H
-
C
-
coo
-
amino
groups
'
H+
H
-
,
-
COO
-
in
glycine
a-
Amino
Acid
1919cm
e)
at
!
Am
,
acid
(
glycine
)
I
t
Thet
protonated
amino
9°4P
Electronegative
oxygen
atoms
withdraws
electrons
from
the
in
the
carboxyl
group
withdraw
carboxyl
group
,
lowering
Its
pKa
electrons
from
the
amino
group
,
lowering
it
pKa
pf3

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Amino Acid : Ionization and Environment

contain at least^ two^ Ionizable^ protons,^ each^ with^ its^ own^ pKa

no / The^ carboxylic^

acid has^ an^ acidic^ pKa and^ will^ be^ protonated at^ an^ acidic^ (low^ )^ pH :

AAAA- gpq-g.gg

  • cootie> (^) ooo - + ti /The amino (^) group has a basic^ pKa and^ will^ be^ protonated^ until^ basic^ pH^
(high) is^ achieved^ :

ANAP

  • NH; NH
+ H^ "

Environmental Effects A- (^) carboxy group is^ much^

more acidic^ than^ in^ carboxylic^

acids

A- amino group Is^ slightly^ less^

basic than in^ amines

Due to^ intramolecular^

interactions 7-The^ normal^ pKa^

for a

PKa (^2) μ

carboxyl group^ is^ about^

Methyl -^ substituted^ amino^ group^ is^ about^10 :b """" """"°^ " """""" ""

""""^ """^ "

groups (^) CH ,^ -^ COOH^ CH,^ -^ COO

II

  • (^) e-my mine
+ Acetic acid

H+

1MHz

carboxyl and H -^ c-^ "°" "

¥ 3 H - C - coo -

amino groups

↓' H+ H -

,

  • (^) COO^ -

in glycine a-^ Amino^ Acid^ 1919cme) at!Am, acid (glycine)

I t

Thetprotonated amino^9 ᵗ°4P^ Electronegative oxygen atoms

withdraws electrons^ from^ the^ in^ the^ carboxyl^ group^ withdraw carboxyl group ,^ lowering^ Its^ pKa^ electrons^ from^

the amino group,

lowering it^ pKa

Ionization and^ Titration^ curves

low pH →amino^ acid^ exists^

in a positively charged^ form^ ;^ cation

high pH^

→am 10h^ acid^ exists^ in^ a^ negatively charged^ form;^ anion

Between the^ pKa^ for^ each^ group^ ,^ the^ amino^ acid^ exists^ in^ azwitterion

form , in which^ a^ single^ molecule^

has both^ a^ positive and^ negative^ charge

cation → Zwitterion - →^ Anion^ ZWItter

/ ON Nit (^) Has

13 PK^ , predominate at^ pH^ values^ between^ the^ pKa values^ of

  • ◦on

4+2 %!^1 the^ amino^ and^ carboxyl^ groups

Glycine amino^ acids^ without^ ionizable side^ chains^ , the^ Isoelectric = (^). _÷:÷ :

-. Point (equivalence point.pl)^ IS^ :

  • PI =^ -pKz ,
7- Net^ charge^ __^0
  • I - AA is^ least^ soluble^ in^ water
Pks.ae
    • ¥-7 I
/ - AA does not migrate in^ electric^ field
  • : 0 ,#,!g 2 basic^ acidic group 1-1 (^) group
OH

( equivalents)

↓ I ↓ f'

Han - g

  • (^) COOH +1-1, - (^) c- coolI R amino acid^ twitter10h
+ NH

}

  • NH }^ MHz I
PK ,^ I^ pkz R -

g

  • (^) COO R - ¢ -^ COOH^ →^ R^ -^ C^ -^ COO

H ←^ I H

  • H

CEoE→_→aOEgoaE6o-Ey

low (^) pH pH ,=%%agyg

high pH