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Evolutionary Mechanisms Problem Set | BIO 112, Assignments of Biology

Material Type: Assignment; Class: Organisms,Evolution,Ecosystems; Subject: Biology; University: Davidson College; Term: Fall 2007;

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BIO 112, Fall 2007 Dr. Paradise
EVOLUTIONARY MECHANISMS PROBLEM SET
Work the following problems before you arrive at lab on 9/5 or 9/6. The first four refer to
the population of mice in the computer simulations; some of the rest may challenge you further.
1. Assume that the frequency of the black allele in the population is 0.6, and that the
population meets all of the expectations of the Hardy-Weinberg equilibrium theory. What are
the expected genotype frequencies for the coat color locus in this population? Show your
work.
Here, the black allele is A, whose frequency is denoted by p. p = 0.6 and q = 0.4.
p
2
thus = 0.36, 2pq = 0.48, and q
2
= 0.16
2. If the population continues to meet the assumptions of the Hardy- Weinberg Equilibrium
theory, do you expect the allele and genotype frequencies at this locus to change drastically
over time? Explain your answer.
Assuming that observed initial frequencies equaled expected frequencies, then the
allele and genotype frequencies should not change over time.
3. Now investigate the coat color locus in another large population of this mouse species. In a
sample of 100 mice from this population you find 60 with black coats, 10 with gray coats,
and 30 with white coats. Calculate the allele and genotype frequencies in this sample.
Allele frequencies are 0.65 (p = [(# of black mice *2)+(# of gray mice)]/2*number of
mice), and 0.35 (q). Genotype frequencies are p
2
= 0.42, 2pq = 0.46, and q
2
= 0.12.
4. Is there evidence to suggest that evolutionary mechanisms are operating on the coat color
locus in this population? (This will require you to compare your observed genotype
frequencies with those predicted by Hardy Weinberg - show your work) If so, which
evolutionary mechanisms would most likely cause such deviations from Hardy-Weinberg
expectations?
There are far fewer heterozygotes than predicted by H-W Theory. This suggests a
couple of possible mechanisms. Positive assortative mating, selection against gray
mice, selection for black and white mice, or emigration of gray mice out of the
population are all possibilities. Can you think of others? Can you devise an
experiment or study to test which mechanism is in action?
5. In the plant Phlox the alcohol dehydrogenase (ADH) locus shows two alleles a and b. The
following genotypic frequencies were found in a population; aa = 0.05, ab = 0.35, bb = 0.60.
Calculate the allele frequencies.
Frequency of the “a” allele is 0.225 and frequency of the “b” allele is 0.775.
6. In a sample of minnows from a local stream, three genotypes controlled by 2 alleles (a
1
& a
2
)
at one esterase locus showed the following numbers in the population; a
1
a
1
= 10, a
1
a
2
= 75,
and a
2
a
2
= 15. Are these numbers what you would expect if this population were in Hardy-
Weinberg equilibrium? If not, is one microevolutionary mechanism more likely to be acting
pf3

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BIO 112, Fall 2007 Dr. Paradise

EVOLUTIONARY MECHANISMS PROBLEM SET

Work the following problems before you arrive at lab on 9/5 or 9/6. The first four refer to the population of mice in the computer simulations; some of the rest may challenge you further.

  1. Assume that the frequency of the black allele in the population is 0.6, and that the population meets all of the expectations of the Hardy-Weinberg equilibrium theory. What are the expected genotype frequencies for the coat color locus in this population? Show your work.

Here, the black allele is A, whose frequency is denoted by p. p = 0.6 and q = 0.4. p^2 thus = 0.36, 2pq = 0.48, and q^2 = 0.

  1. If the population continues to meet the assumptions of the Hardy- Weinberg Equilibrium theory, do you expect the allele and genotype frequencies at this locus to change drastically over time? Explain your answer.

Assuming that observed initial frequencies equaled expected frequencies, then the allele and genotype frequencies should not change over time.

  1. Now investigate the coat color locus in another large population of this mouse species. In a sample of 100 mice from this population you find 60 with black coats, 10 with gray coats, and 30 with white coats. Calculate the allele and genotype frequencies in this sample.

Allele frequencies are 0.65 (p = [(# of black mice 2)+(# of gray mice)]/2number of mice), and 0.35 (q). Genotype frequencies are p^2 = 0.42, 2pq = 0.46, and q^2 = 0.12.

  1. Is there evidence to suggest that evolutionary mechanisms are operating on the coat color locus in this population? (This will require you to compare your observed genotype frequencies with those predicted by Hardy Weinberg - show your work) If so, which evolutionary mechanisms would most likely cause such deviations from Hardy-Weinberg expectations?

There are far fewer heterozygotes than predicted by H-W Theory. This suggests a couple of possible mechanisms. Positive assortative mating, selection against gray mice, selection for black and white mice, or emigration of gray mice out of the population are all possibilities. Can you think of others? Can you devise an experiment or study to test which mechanism is in action?

  1. In the plant Phlox the alcohol dehydrogenase (ADH) locus shows two alleles a and b. The following genotypic frequencies were found in a population; aa = 0.05, ab = 0.35, bb = 0.60. Calculate the allele frequencies.

Frequency of the “a” allele is 0.225 and frequency of the “b” allele is 0.775.

  1. In a sample of minnows from a local stream, three genotypes controlled by 2 alleles (a 1 & a 2 ) at one esterase locus showed the following numbers in the population; a 1 a 1 = 10, a 1 a 2 = 75, and a 2 a 2 = 15. Are these numbers what you would expect if this population were in Hardy- Weinberg equilibrium? If not, is one microevolutionary mechanism more likely to be acting

than others, based on the data?

To determine this, we must calculate allele and expected genotypic frequencies. Allele frequencies are 0.475 (p for a 1 ) and 0.525 (q for a 2 ). Expected genotype frequencies are p^2 = 0.23, 2pq = 0.50, and q^2 = 0.27. Here there are far more heterozygotes observed in the population than one would expect based on H-W equilibrium conditions. Heterozygotes may be selected for, homozygotes may be selected against, negative assortative mating could be occurring, or there could be migration of heterozygotes into the population (or homozygotes out).

  1. What is the frequency of heterozygotes (Aa) in a population in which the frequency of all dominant phenotypes is 0.25 and the population is in H-W equilibrium?

If I use the word dominant, that assumes that heterozygotes display the same phenotype as homozygote dominants, and thus p^2 + 2pq = 0.25. q^2 must equal 0.75, making q = 0.866 and p = 0.134. The frequency of heterozygotes is equal to 2(0.866)(0.134) = 0.232.

  1. The following frequencies are know from extensive research on a large population of PTC tasters and Non-Tasters: TT = 251 individuals; Tt = 250 individuals; tt = 334 individuals

a. What are the allele frequencies of T and t? We must first calculate observed genotype frequencies, which are 251/835 (0.30), 250/835 (0.30), and 334/ (0.40). Allele frequency of T is then 0.45 and that of t is 0.55. b. What are the expected genotype frequencies? For TT, p^2 = 0.20, for Tt, 2pq = 0.50, and for tt, q^2 = 0.30. c. What are the phenotype frequencies? The observed phenotypic frequencies are the following: PTC tasters = 0.60, and non-tasters = 0.40. The expected phenotypic frequencies are 0.70 for tasters and 0.30 for non-tasters.

  1. Suppose the following data were accumulated for the frequencies of each of three genotypes at 5 separate loci, A through E: AA: 0.36 BB: 0 CC: 1.0 DD: 0.70 EE: 0. Aa: 0.48 Bb: 0.03 Cc: 0 Dd: 0.20 Ee: 0. Aa: 0.16 bb: 0.97 cc: 0 dd: 0.10 ee: 0.

a. Which loci are monomorphic? Which loci are polymorphic? Only C is monomorphic, which is to say allele fixation has occurred. All others are polymorphic. b. What are the allele frequencies at each locus? I will give p only for each locus: p(A) = 0.6, p(B) = 0.015, p(C) = 1.0, p(D) = 0.80, and p(E) = 0.50. c. Is there evidence that some mechanisms of evolution are acting at some loci but not others? How can this be? The only locus that appears to be significantly out of H-W equilibrium is the D locus, which has fewer heterozygotes than predicted based on allele frequencies. It is possible that loci B and C, being either close to fixation or fixed, had evolutionary mechanisms acting in the recent past, but are now in equilibrium. Different loci that are not closely linked on the same chromosome can sort independently during meiosis, leading to some being subject to evolutionary mechanisms and other not, or they could all be subject to drift, but go in different directions (in this case, unlikely, since 4 out 5 are in H-W equilibrium – if drift were acting, it’d be acting on all loci within a