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BIOL 308 MT #1 Study Cards | BIOL - Molecular Biology, Quizzes of Molecular biology

Class: BIOL - Molecular Biology; Subject: Biology / Biological Sciences; University: University of Waterloo; Term: Forever 1989;

Typology: Quizzes

2010/2011

Uploaded on 10/08/2011

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TERM 1
BIOL 308 - Lecture 5 What is the rate of
renaturation?
DEFINITION 1
-measure of complexity of DNA/genome
TERM 2
What is the speed at which a single strand is
able to find a complementary strand and base
pair with it?
DEFINITION 2
Reassociation kinetics
TERM 3
What is CoT used to measure? What is Co?
What is t?
DEFINITION 3
CoT measures renaturation.Co - intial concentrationt =
reaction time
TERM 4
What are the three main classes of DNA in
EUKARYOTIC genomes?
DEFINITION 4
-unique --> one to few copies, slow renaturation, mostly
protein coding sequences-moderately repetitive --> middle
renaturation, code for some protein families as well as tRNA
and rRNA, some are transposable-highly repetitive --> lots of
them, fast renaturation, unknown role and mostly in the
telomere-centromere regions
TERM 5
E.Coli genome(2) vs. Calf genome (2)
DEFINITION 5
E.Coli:-largely unique-once sequences are found, fast
reassociationCalf:-fast reassociation-some unique
sequences: start slow but then get faster as it moves along
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BIOL 308 - Lecture 5 What is the rate of renaturation? -measure of complexity of DNA/genome TERM 2 What is the speed at which a single strand is able to find a complementary strand and base pair with it? DEFINITION 2 Reassociation kinetics TERM 3 What is CoT used to measure? What is Co? What is t? DEFINITION 3 CoT measures renaturation.Co - intial concentrationt = reaction time TERM 4 What are the three main classes of DNA in EUKARYOTIC genomes? DEFINITION 4 -unique --> one to few copies, slow renaturation, mostly protein coding sequences-moderately repetitive --> middle renaturation, code for some protein families as well as tRNA and rRNA, some are transposable-highly repetitive --> lots of them, fast renaturation, unknown role and mostly in the telomere-centromere regions TERM 5 E.Coli genome(2) vs. Calf genome (2) DEFINITION 5 E.Coli:-largely unique-once sequences are found, fast reassociationCalf:-fast reassociation-some unique sequences: start slow but then get faster as it moves along

T/F 0% re-associated (ds) DNA is the same as 100% denatured (ss) DNA. T - because everything is still single stranded TERM 7 What happens if genome is all unique in sequence? What happens if there are some repetitive sequences? DEFINITION 7 All unique:Complexity = # of nucleotidesSome repetitive sequences:Complexity = # unique + # of nucleotides from one copy of repetitive sequence TERM 8 What four things have circular DNA? DEFINITION 8 -chloroplast-mitochondria-virus-prokaryote TERM 9 4 steps of Circular DNA denaturation DEFINITION 9 Double stranded native molecule --> Tangled --> Nick in one strand--> stands completely denatured*Primary agent of denaturation is heat TERM 10 What is the primary structure of DNA? DEFINITION 10 Sugar-phosphate chain with purine/pyrimidine side chains

What ways is the primary structure of RNA similar to DNA?

  • 2'OH group makes sure alpha helix fforms-can be ss/ds, linear/circular TERM 17 Secondary Structure of RNA: T/F: RNA molecules fold back on themselves to form base paired segments between LONG stretches of comp. sequences DEFINITION 17 False, between short stretches TERM 18 T/F: RNA can exhibit non-Watson Crick base pairing. If so, what is the reason? DEFINITION 18 T - to enhance potential for self-complementarity TERM 19 T/F: Secondary structures in RNA contain areas of regular helices and discontinuous helices w. Stem loops and hairpins DEFINITION 19 True TERM 20 Why is RNA able to fold into highly complex tertiary structures? How are pseudoknots formed? DEFINITION 20 Because it has a high degree of rotational freedom in the backbone of non-paired regionsFormed when there is base- paring between sequences that are not adjacent