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Biochemistry 2 Exam 1 and 2 study guide and past questions, Exams of Biochemistry

Biochemistry 2 Exam 1 and 2 study guide and past questions

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2024/2025

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BIOCHEMISTRY PART
I1
Exam
#1
and
#2
Chapter
38
1.
Martin Rodbell frrst described the
G
proteins in 1971 (pg261)
2.
In
the resting cell the
G
protein norrnally lies adjacent to the receptor
in
an inactive off
state
@g263)
3.
An
example of a monomeric
G
protein is Ras (pg265)
4.
Gp
stimulates phospholipase c (pg263)
Chapter
39
1.
Target cells have
high
affinity receptors that convey specificity
2. Insulin receptor is tetrameric
3.
Receptors with endogenous tyrosine kinase activity are capable of autophosphorylation.
4. Peptide hormones
hulin
binds to tetmmeric receptors
5.
Insdin signal transduction mechanism
6.
Steroid hormones bind to intracellular bi-firnctional receptor proteins
Chapter
40
1.
DNA polynucleotide chain has specific directionality, growth occurs at 3'end
2. Know the different chargaffs rules
3. Know structure of Eukaryotic chromosomes
4.
Prokaryotic DNA is organized into operons
5.
Know that human mitochondrial DNA
is
circular
Chapter
41
1.
Most significant amount of experimental support is found in the semiconservative
model
2.
In
DNA replication, replication proceeds bidirectionally and semiconservatively
3.
Know the requirements for DNA replication
Chapter
42
1. Know the steps
in
replication
2. Know the role of the primase RNA polymerase
3.
The lagging strand grows away fiom the replication fork
4.
As
we age we loose genetic material
5. Telomere replication
6.
Each origin has two replication forks
7. Inhibitors of reverse transcriptase are acyclovir
and
AZT
.
8.
Telomerase prevents aging and loss of genetic material
Chapter
43
1.
Single amino acid change from
glutamate
to valine by single base change
A
-
U
is
responsible for sickle cell anemia
2.
Alpha thalassernia is an example of nonsense mutation
3. Base excision repair (pg305)
Chapter
44
1. tRNA
has
a dual role of polarity
2. rRNA has both structural and enzymatic roles
Chapter
49
pf3
pf4
pf5
pf8
pf9
pfa
pfd
pfe
pff

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BIOCHEMISTRY PART I

Exam #1 and

Chapter 38

1. Martin Rodbell frrst described the G proteins in 1971 (pg261)

2. In the resting cell the G protein norrnally lies adjacent to the receptor in an inactive off

state @g263)

3. An example of a monomeric G protein is Ras (pg265)

4. Gp stimulates phospholipase c (pg263)

Chapter 39

1. Target cells have high affinity receptors that convey specificity

  1. Insulin receptor is tetrameric

3. Receptors with endogenous tyrosine kinase activity are capable of autophosphorylation.

4. Peptide hormones hulin binds to tetmmeric receptors

5. Insdin signal transduction mechanism

6. Steroid hormones bind to intracellular bi-firnctional receptor proteins

Chapter 40

  1. DNA polynucleotide chain has specific directionality, growth occurs at 3'end

  2. Know the different chargaffs rules

    1. Know structure of Eukaryotic chromosomes

4. Prokaryotic DNA is organized into operons

5. Know that human mitochondrial DNA is circular

Chapter 4 1

  1. Most significant amount of experimental support is found in the semiconservative model

2. In DNA replication, replication proceeds bidirectionally and semiconservatively

3. Know the requirements for DNA replication

Chapter 42

1. Know the steps in replication

  1. Know the role of the primase RNA polymerase

3. The lagging strand grows away fiom the replication fork

4. As we age we loose genetic material

  1. Telomere replication

6. Each origin has two replication forks

  1. Inhibitors of reverse transcriptase are acyclovir and AZT (^).
  2. Telomerase prevents aging and loss of genetic material

Chapter 43

  1. Single amino acid change from glutamate to valine by single base change A - U is responsible for sickle cell anemia
  2. Alpha thalassernia is an example of nonsense mutation
  3. Base excision repair (pg305)

Chapter 44

  1. tRNA has a dual role of polarity
  2. rRNA has both structural and enzymatic roles

Chapter 49

1. Glycine is exchange for valine

2. Over secretion results in over stimulation of the same cell (autocrine stimulation)

3. Transducers are permanent activation of proteins

4. V-jun and V-fos are viral oncogenes for nuclear proteins

5. Oncogenes can be produced from proto-oncogenes by mutations induced by radiation

effects or chemical carcinogens

6. V-ras is another viral oncogene

7. V-ras encodes for a mutated from of V-Ras

8. 15% of all cancer deaths are now thought to be due to infectious agents

9. Bacterium H-pylori is strongly associated with peptic ulcer disease and gastric cancer

10. Know what amplification means

11. Know that gene arrangements lead to amplification and over expression of the gene

12. Know that p53 is a protein that regulates cell cycle activity

Chapter 50

1. Know difference between western and southern blotting

2. Know that Pfb is a heat resistance (pg345)

Chapter 51

1. Know how many ATPs are produced in anabolic and catabolic reactions

2. Know how many ATPs are produced per cycle

3. Know what GLUT 4 and GLUT 2 do and where (IMPORTANT)

Chapter 56

1. In fed state insulin/glucagons is high

2. Glucagon increases during starvation

  1. BMI - know it's from weight and height
  2. Know Leptin - Brain

1. Pyrimidine biosynth is very highly regulated. Know the regulatory commited step

in mammals.

2. In the formation of orotate it is catalyzed by a mitochondrial enzyme.

3. IN dump to dTMP, it is catalyzed by the thyrnidylate synthase using N5, N

methleneterahydrofolate as the methyl group.

Ch. 28

4. Thromboxane A2 is a powehl vasoconstrictor that also increases platelet

aggregation.

Ch. 29.

5. Triacylglycerides are composed of 2 fatty acid chains esterlied to a glyecerol

molecule

6. Colipase cofactor required for activity of pancreatic lipase

7. Cholesterol ester is also carried in the core of the chlyomicron.

8. The hormone sensitive lipase is inhibited by insulin (know the little chart)

9. Alpha hydroxylase involved in Ratsum's disease

10. for Beta oxidation energy production know 14C creats # of ATP's

I. Biological meml>rriiltsfolin HIGHLY SELECiTEE. barriers between intracellular

compartments and benvezn the extedi~ro f the ce!l and 111sinternal environlnent.

  1. k f e m b r i ~ ~ ~ e swith a high popo!-tion oi'saiurzted faiQ acids prai:idc a better barrier

to r!le ~navtlnlettof tlic molecuies.

3. C~ho1erte;:olis Fd~!ildpredoininately in the plasma membrale of eukal-yotic orgsnisims, b u ~not in mosi prokat-yotes.

3. The cholerterol molecule insei-ts itself inlo the membrane with the sanle

oi.ierltaiion as phospholipid molecults: MiITli THE SLIGHTLY POL.4R OH

GROllP TO1V:IRD T$EE EXTERIOR.

5. Hiological mznlbranes are very dynanic structures because proteins xi: laterally

mc?bile within one !eallei ni'the bilayer. 6. Thcre is considzrahi-c:functional orgsilization of the proteins within bic?!ogical 1:letnhrrwss (,i.e. p;ottin.s of th2 electroll transport chain).

7. h3eiiis;ed 7'1-a11sl~onis the ~nc?.i.e?neiltof niol~culezacross biological menlbrsnes

riided by a specilii. carritr s! r;icnl usually proteinaceous in natlnr. C

S. I'he imlo~lntof cll~l;7sterolmay valy with the tj:p-2 of membi~me.

  1. ,$mount of ~ r o r e u lin biologcal inembrix~cs.a:ies frorn20?1 in ~lzem;elin shei~tlz to ?0?i1in the inner mitochondrinl msn~brane. m e hindin- of GTI' allnas the alpha subunit to dissociate !Yon1 the bcia-gainina conlplzs thcreby t~u11iri.git on. 1 I. A v;ide \xi&!. of exiernal stimuli (~hT..17ROTR~LYS3:IIl-TEIiSi liOR?vfOIT.S,

PI IOTOhS- .:lSD GROWTH I-ACT(_)RS.)can activate specific rne~nbersof this

receptor fiunily aizd ~xonloteinteraction hetween the receptor and the G Protein 011 the iniracellular side of thi: membrane.

12. G Ploizins can. either sti.m~~lateor inhibit adenylate cyclasi: actil~ity.

13. Know TABLE 1 (:Populations of G Proteins) on page 14.

  1. Ci Proteins fbun p x t oi'a tralsmernbrx~ssignaling pathway in which they serve as

3 F.lIKCTIOXl%LLIXK betv~eenthe receptor on 111 scell sullace and effectors

generating secondary messengers, c,k:IP, IP3, uld DAG.

I 5. Know about VlRRC) CHOLERA b a s e 17).

  1. Know about BORDETE-LLA PERTLTSSIS (p'age 17).

17. There is a sillall group of 3:lOVOMERIC G Proteins ill~olvedin cellulcu

1.7roliferation and differentation, protein synthesis, ahd the movement of nrga~slles through the cj-tosol. \

  1. Alplzri subunit has a sloi<i intrinsic GTPare activity that quickly hydrolyzes bound

^ GTP^ to^ GDP.

I-ECTURE ::SIGN 41- TRXhSDL CTlf): PEPTIDE .4YD STERTIID I-IORhlOXES

! 9 Hc>~ilz<>~?esare ho~!ndlo PL.4SkI.4 PROTEIS C.XIIITERS.

20. Carriers for steroid horn~ones,tlld\i- these hydrophobic ~ i ~ b s t a i c ~ sio c s i s ~in the

48. kl ";:;On- ihc ~)icgc;:,z,n,llix:-.>I.IJ~L.;-L .><'Il>.- C. I 11.c xllcjs>t-.qOl;"s... c.. ,;L...

49. Kfioii iib:.,ul Heiicase.

. ... (^) 9. ,.. 5:). la I-:$. :. "Si!la].c:.. >::.and+:] Ij5,I)i f;ifiJiiig j'rot~.i;~~"is circ]c-J u;j sr,zm *A **^ i^ f:C1-(:f:E-^ 7 :^ 1)X.A^ l<t;f'l.,]c_',q']0?;

5 I. Primclse !!as a eiT<))irate sillce i t lacks PROOF E. A D f i G ABILITY.

53. The fr'r;lgx~nisof DX-4 that are Iefi arc called "Okmki Fragments''

53. ?RilL thymidine l;inzxe acts before CELL.LL.AR thmliiline kin=?.

53. 111 order to ~?re.-cntthe loss of genktic matiers1 the cells rely on a specialized type o i' l-zverse trai~scripiase.TE.LOl:EIt4SE. LECTIjRE 8: >,IIjT;ITJOXS .:\TD EPLm 55. Point muti~tionscan be riefilred as 'TKANSLTIOXS OK TRXhSVEKSIOYS. 56. A TRASSVERSIGK is a chrulge iYom a pyrimidine io a purine or the opposite.

57. SZJSSEXSE,: Ifby chancz, the code f~>rone anino acid is changed for ihe STOP

CODOT, the prctsin may he ABRUPTLY TEK:SmATET) ,uld is most often

d>ysfun~tioi~al.

5 3 .. A LV Light (011 exam)

  1. The ma.jc7r chemical lesion i n this casc is the fomlatioil of DI?vlE.RSbetween

I\DJ_:lf :EST T'HYMfiE.

60. ihz heading "AUCI.,EOTII>E ENCISIO!< REPAIR" is circled \v! a note that sq:s

'-repair damage to 1-\1' lii.111. E?;,;Z!vl." LEC7rURE 9: T1_'(4and L+-a-RAhxS f Ri-'

61. IiYA is single stranded, ~~:lbranchedand linear.

62. The proczss tk~herehyRK.4 copizs a1.c made fiom a si=l.i=ctedDXA ii=nip!aii=is

knomm as TRASSCRIPTION.

  1. DKA DEPETDENT IiSA PC)LI-kfER:'lSE catalvzes this process and in eukayotes ir tnkes place in thz nucleus or th:: n~itochondriasince single strs~ldcd D M TEl;fl'LXTE is requii-ed.
  2. CLO17ERLEXFsecondnq- tluctwe is a ch;u.actc~*isticof tR\X.
  3. Ribosonlal RqA 11as BOTH STRUCTUIUL AKD EYZYTlL-ITIC ROLES. LECTURE 10: THE GEhT.T'IC CODE
  4. The genetic code is LARGELY UKI'C.IERSAL.

67. Thi=genetic code is HIGHLY DEGEXERAE.

68. The zgenetic code i r;. A~JI.BIC;L~OL~S.

  1. The genetic code i - 5 O\E.WAPPNG.
  • i O. Transition vs. Triu~sve.rs~on@ I LE.CT(!'RE I 1: PROTEIK SYNTHESIS 71: When a cell makes a protein, the idolmation in a particular gene is pssed on to

another molecule, rnRNA, in the process of TRAYSCRIPTIOY.

72. The mRUA or thit primap trarlscript carries the message about this pa-liclilar

wt?li~~oacid sequence to the - Sbosomes-. in-the c:,?opIasni, where the message in ill?

P Y A i-. TR;;' - -.-i 7 - -F=- tXSL.;ZTED.. a%(r17A56~oacids ariri: added sequeniially according LO

      • -. -- the instructions i!l the inRNA.