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Assays for Insert Transformants - Experiment 1D | CHEM 603, Lab Reports of Biochemistry

Material Type: Lab; Class: Introductionto Biochemistry Laboratory; Subject: Chemistry; University: University of Wisconsin - Milwaukee; Term: Unknown 2000;

Typology: Lab Reports

Pre 2010

Uploaded on 09/02/2009

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Experiment 1d
ASSAY FOR INSERT TRANSFORMANTS
Today, you will determine if your bacteria have become transformed by your
recombinant plasmid. To accomplish this, you will perform the following two assays. The first
is very simple: look on your plates for growing colonies. If there are colonies, congratulations!
You have successfully transformed bacteria. This, of course, is true because the presence of a
plasmid within the bacteria has allowed growth under the selective pressure of an otherwise
lethal dose of antibiotic (e.g. ampicillin).
The second assay is designed to detect the presence of bacteria that have the gene (in the
plasmid we have made) for and therefore can express the HPPD protein. This involves
observing the development the unique color associated with the oxidative breakdown of the
product of the HPPD reaction, homogentisate (see lab manual introduction).
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Experiment 1d

ASSAY FOR INSERT TRANSFORMANTS

Today, you will determine if your bacteria have become transformed by your

recombinant plasmid. To accomplish this, you will perform the following two assays. The first

is very simple: look on your plates for growing colonies. If there are colonies, congratulations!

You have successfully transformed bacteria. This, of course, is true because the presence of a

plasmid within the bacteria has allowed growth under the selective pressure of an otherwise

lethal dose of antibiotic (e.g. ampicillin).

The second assay is designed to detect the presence of bacteria that have the gene (in the

plasmid we have made) for and therefore can express the HPPD protein. This involves

observing the development the unique color associated with the oxidative breakdown of the

product of the HPPD reaction, homogentisate (see lab manual introduction).

Today’s Strategy

Obtain your plates and assay for colonies visually.

Assay your plates for HPPD activity.

Dispense 5 mL aliquots of LB + amp broth into 2 culture tubes.

Inoculate a single colony with a colored halo into each culture tube.

Prepare LB Broth for Experiment 2a

B VISUAL ASSAY

The assay for bacteria expressing HPPD is to be performed visually.

1. Choose either the 20 μL or 200 μL transformation plate (which ever has a good selection of

colonies, in the realm of 20-200).

3. Examine the plates for colonies that have a distinct caramel halo. This halo is formed by the

oxidation and polymerization of the HPPD reaction product, homogentisate. The halo is

evidence of HPPD over-expression in that colony.

HO

O

O

O

HO

OH

O

4 - Hydroxyphenylpyruvate dioxygenase O 4 - Hydroxyphenylpyruvate O

O

O

O

polymerization Ochronotic Pigment Alkaptonuria oxidation

C. INOCULATION

1. With sterile technique use sterile wooden stick to pick a single colony that has a halo off the

plate and plunge the bacteria into a 5 mL culture tube containing LB broth with 100 μg/mL

ampicillin.

2. Repeat this procedure with a second single colony.

3. Label your tubes and place them in the common rack for overnight shaking incubation at

o

C.

Points-to-Ponder

a) Can you conceive of a way(s) in which the development of the halos of the colonies could be

enhanced. Consider the underlying processes that bring about the ochronotic pigment.

b) What is Lauria Bertani Broth?

c) The color that develops around the bacteria is induced by our genetic tampering. Some

pathogenic bacteria, however, make very similar pigments by these same enzymes natively.

What do you imagine this may be for?